YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: scp1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFTLGKGR ISRGYARQVN PSLFAKYSYC IANNPWYFIL VFTLLSITGI YSSLVAYQQS  60
   61 LYDQSLARWS AWYAESINAE ANVITKQLYL LGTNTSVFSE DYLSNAYRWE TSFHQYLAEY 120
  121 GYPCIRDEKS CVTISPIPKY YGKVDPVAQY SYTKGLPENE REVNKLRNDT IAEGFDSLSA 180
  181 FVITYFLKPE QVDTFHVVLK KFISETPNLY ASLLDTSPTT VVARIPDLTV IYRWYLWVGF 240
  241 GVGLFAYLYL SLVRLHDIRA KFGLTATIFI QSGTAYFSTC SLLYFFERTG PICPWPMAYY 300
  301 IIIFMDIENS FRLLRAVIAS PQTKRVPSRI MEGFSSTIIA SFSSLLKKLL TLFVLSFFVY 360
  361 PLVQEFCLFL ACSFVVSFLL HGSFFLAVLS VDIRRLELQD FLDSNSSNRN SKWWVPYLEY 420
  421 VRFMWSPWII DNLGTVSFHM YVIYLQLQSS TDINGSWRLA SPNIRFLITL YHRLGRILRE 480
  481 RKLFPLITTG WFGDPTFLEA LKEKTMAENL VIALYRPVIL DTVNRRDYTN VYNSFHDRRV 540
  541 WRWSTFFSIL FAIDFAVGLL VKALLRGWSD HDELSTDTTL HEEKFRIEPV PVHHQLDILK 600
  601 IAVSENYKTF ASVGLDRCLV VWDLRQWCTK LVLSKEQMPR TLKAIALDPQ GNYVSLFSKD 660
  661 TLFILNVESP CLMLQHSYHC KPNSKLNVFW MPGTHKDDEW KNFELVVVES SGEIQVFSLT 720
  721 IEIEGADIAL VEKFQLSSPI IKSISIVSPT ANRIACLTES GEVTVYSKKG PVWSPKILSQ 780
  781 NKNYLTETKK DIYGIAMADI LFLARDSGVD MIDLKNDELL HSFTLPPIKV NTFSVGVSNS 840
  841 RFVNGQFRVS SISFCFTHAV TEKVLYYYYG NECNESYIIL NKWDQQPNLV DVHDPDNSLA 900
  901 CLTFDELQEN IHEVEDASEC VMSSDGLYIF GMRRKSSSGI CPTADEKNED NGFTLRNRKL 960
  961 RTGHYNWTSY VPLLDSYMQD MEHKKNTHSG GETQVWEVWM YSQSEKKHRC KSLKMYNSLI1020
 1021 IADPGPSLAV SDRCVAIVLG NYVALVGYGS EIFRDFYQIR NSDEMDRILR RKRKNLQRKR1080
 1081 SGTIGC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle