YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC1B2.03c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLTGAHMLK IHRPSIDHPF GVDLWHLFEQ LSIKTIGWNP SEFEYIPGKT PMSQWSSVIV  60
   61 SITAYYVIIL SGRAIMTNRK PLKQRRLFQL HNFILTIISG ALLALLVEEV FRNYMRNGLF 120
  121 YCVCDSRHFT QRLVTLYYLN YLTKYLELMD TVFLFLKKKP LAFLHCYHHG ITALLCFTQL 180
  181 LGRTSVQWGV IGLNLYVHVI MYSYYFLAAC GRRVWWKQWV TRVQIIQFVL DLILCYFGTY 240
  241 SHIAFRYFPW LPHVGDCSGS LFAAFFGCGV LSSYLFLFIG FYINTYIKRG AKKNQRKAAG 300
  301 KADNTSVAAA AGSEALAATT ATNASPFSAR SRKL

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.65
Transmembrane Helix	55	76	0.83
Cytoplasmic	77	87	0.77
Transmembrane Helix	88	107	0.90
Non-Cytoplasmic	108	189	0.61
Transmembrane Helix	190	209	0.84
Cytoplasmic	210	224	0.71
Transmembrane Helix	225	244	0.92
Non-Cytoplasmic	245	260	0.89
Transmembrane Helix	261	283	0.94
Cytoplasmic	284	334	0.84