YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC323.07c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	125	0.73
Transmembrane Helix	126	140	0.56
Non-Cytoplasmic	141	141	0.02
Transmembrane Helix	142	156	0.56
Cytoplasmic	157	169	0.63
Transmembrane Helix	170	191	0.89
Non-Cytoplasmic	192	208	0.55
Transmembrane Helix	209	227	0.65
Cytoplasmic	228	238	0.76
Transmembrane Helix	239	262	0.85
Non-Cytoplasmic	263	272	0.76
Transmembrane Helix	273	295	0.84
Cytoplasmic	296	314	0.77
Transmembrane Helix	315	334	0.90
Non-Cytoplasmic	335	353	0.82
Transmembrane Helix	354	375	0.85
Cytoplasmic	376	394	0.82
Transmembrane Helix	395	414	0.95
Non-Cytoplasmic	415	434	0.88
Transmembrane Helix	435	456	0.89
Cytoplasmic	457	463	0.83
Transmembrane Helix	464	487	0.90
Non-Cytoplasmic	488	494	0.76
Transmembrane Helix	495	515	0.93
Cytoplasmic	516	533	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRFFSKLFS KSPTSGRVPS PDSDYSEEEQ RLLAEENGYF QDSNEYVEPN IPAVYGSMIP  60
   61 VAQQLQQHHV HTPGESFADN ASGYPVIKHE LSELLRLGSP TVIAYLLQSS EQFSTVFTLG 120
  121 HLGKEYLAAS SLSTMTAAIS AFSIFQGVIS SLDTLATQAF GANKPYNVAI YLQRCLLILA 180
  181 VLHIPVALIW LNLEHILIFL HQDPMVAHLC GRYMRVFILA APGYAVFEAL KRYLQAQGIF 240
  241 TPITYVLCFA APLNILLNYL LVWHPTIGFG FLGAPVAVAT TFWFQSICLI LYICFSSTPI 300
  301 PWPGFSRQAL KNLSPMLHFS FHGMLMIVTE WAAYEMTSLG AGYLGTAPLA SQSILLTSTS 360
  361 LLFQIPFAFA VASSTRVGHL IGSGRANLAR LCSRVAYSLA LCISIFDGSL IFCFRDVWGS 420
  421 LFTSDPEVLA VVKDIFPILS LFIVTDGLNA VGGGLLRGTG KQYIGGLISI GSSYLFALPV 480
  481 TVFVVVYFNT GLKGIWCGMI LSSVTAITCQ FTVLFNTDWH RVLQEARHRL THV