YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC29A3.11c
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLPVHNQPH KAHSGSPAST FSAALVSSAI SNVIGYPLDS IKVRQQTYNF PTIRSCFQNA  60
   61 VKNEGLKGLY RGLTLPLISA TLSRSVSFTV YDSLKLTFAH VDPTLRYFIS GLGTGTFISL 120
  121 FACPFEYSKL YSQIDMLLRK TNMGRRQETN SKLSVRPPLS SFQSASDIVR RYGFTALWNG 180
  181 YRYHLTRDAL GSACYFTIYE TFKKNLIAND VKPHFAYAFS GAFCGALSWI LVFPVDTAKS 240
  241 IVQRNTLLSI KTPLSSIPWL SFTIYRGIGI SLMRSALINS CNFTLFELFR ETKVLSK

Type	Start	End	Confidence
Cytoplasmic	1	71	0.55
Transmembrane Helix	72	88	0.34
Non-Cytoplasmic	89	106	0.51
Transmembrane Helix	107	127	0.65
Cytoplasmic	128	213	0.64
Transmembrane Helix	214	233	0.88
Non-Cytoplasmic	234	261	0.59
Transmembrane Helix	262	286	0.53
Cytoplasmic	287	297	0.68