YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	kha1 (reserved)
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.86
Transmembrane Helix	29	49	0.89
Cytoplasmic	50	58	0.82
Transmembrane Helix	59	78	0.88
Non-Cytoplasmic	79	89	0.82
Transmembrane Helix	90	110	0.85
Cytoplasmic	111	122	0.69
Transmembrane Helix	123	146	0.86
Non-Cytoplasmic	147	158	0.82
Transmembrane Helix	159	179	0.93
Cytoplasmic	180	188	0.91
Transmembrane Helix	189	212	0.88
Non-Cytoplasmic	213	222	0.82
Transmembrane Helix	223	246	0.88
Cytoplasmic	247	262	0.90
Transmembrane Helix	263	283	0.95
Non-Cytoplasmic	284	339	0.93
Transmembrane Helix	340	359	0.90
Cytoplasmic	360	373	0.73
Transmembrane Helix	374	395	0.74
Non-Cytoplasmic	396	402	0.57
Transmembrane Helix	403	423	0.86
Cytoplasmic	424	864	0.55
Transmembrane Helix	865	887	0.71
Non-Cytoplasmic	888	898	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIFQISIGM STQSIFDGDN VVVYSASDPL LLFIVQAIII IALCRLIHIP LSFLQQPRVI  60
   61 AEIIGGIVLG PTVMGRIPKF LDYIFPTSSM GPLNLVSNLG LVLFLFVIGM EVDLRVLVLN 120
  121 YKVTLLVTVF SIVIPFGAGA GISAGLYKFT TREFEFGKFL LFISTAMSIT AFPVLARILS 180
  181 ELHLLHKRVG VIVLSAGIGN DVIGWILLAL SVTLVNSGSG VRAVYILLLA LGWCLFLFIA 240
  241 IKPLVYLLAV KTRSLKDKPS ESFICIVLSM VLVSAFFTDI IGIHPIFGGF LVGTIIPHEN 300
  301 DLTVKITEKI EDLVNCLFLP LYFASSGLKT NISTLNTGKI WGYTIGTICV AIASKMGSSM 360
  361 LAARILKMPW SDSLVVGSLM SCKGLVELIV LNIGLSTGIL NETIFSMFVF MAVITTFVTT 420
  421 PMTKFFLRFT KSEHDDNSIE SSEELVQYLP ELPTRLSFLI NHPLDASAAM IFIQHIYENR 480
  481 DKVSGCLHLP QIIIHSIWTL FVDSRTSNLL RASQVDNKVE NEALMGLFET FVKIKKFEYE 540
  541 SNALLVSGTG YYNVVLETLK KSSSNILIMP YLKDYKTIEN ESSSSPLSLS SIRLALGDSF 600
  601 KSLDELIPLI KMARIPVGVF FTRNPHNLSV KKIRPIIRST EYGSPKNDFE QLEKDKKSFD 660
  661 QVEISVKEKG STYERSKVVI LIYLGTENDL IALELLLKFL YEETSIAYIY TYDEFYKDDY 720
  721 ATSLPNVVYT SEVLLSKHND SAFKVWPKLR KNIRKITKPN GFTTDQHSQT FIPSQTHTKL 780
  781 DLRLSDVTDS VRSRINVVKF GNLNSLLSCL HELIQPATLT PSFETEKSIT MFLGCRDKQA 840
  841 VSEKLEVAAL SEMKKLGYIE SSSEFGMLAG LIPLVLLSNF PLIDFFLGKA PTKMVQGY