YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC26H5.13c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFRRPNWS ALFEKIFIQK SFLGFCSLRV GCEIIIWFAI INKVSGLYGI VSLFQNSDAS  60
   61 PWQVLMYVSS VLMLILFSWL AIHIPKSSVP HALILFYVYL IDFLLNVLFT VLFALSWFSK 120
  121 LVQSDSSSTE ESADSDPSPS LLYLFFQAES IPSLLLLIFF ASLKFYFVLI TLSYSNKLIV 180
  181 DSGIRPQNLP PNFSGRVTRL LMKPYIMAAN RSYLRNHTKR FTDSIELEQR LMDEVV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	41	0.96
Non-Cytoplasmic	42	61	0.93
Transmembrane Helix	62	83	0.92
Cytoplasmic	84	92	0.91
Transmembrane Helix	93	117	0.88
Non-Cytoplasmic	118	149	0.91
Transmembrane Helix	150	168	0.89
Cytoplasmic	169	236	0.95