YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC1851.02
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFIKSTLLA TVTVFVGLCG INRFFTLPKC IRYHFRYFAC HTFLAISSAY GVIASVVARL  60
   61 CGYPVMGQYL TAKAYYGLAS TILDFRFKIE NEEILRKHKS AVLVVNHQSE LDILAIGRTF 120
  121 GPNYSVIAKK SLRYVPILGW FMILSDVVFI DRSRRSDAIQ LFAKAARRMR KENISIWVFA 180
  181 EGTRSYSLKP CLLPLKKGAF HLAVQAQVPI IPIAIQTYGH LFHPPTKVFN KGEALIKVLD 240
  241 PIPTEGKTAE DVNDLLHETE TAMNNALVEI DDYGKVKKQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.77
Transmembrane Helix	7	27	0.88
Cytoplasmic	28	36	0.77
Transmembrane Helix	37	58	0.85
Non-Cytoplasmic	59	131	0.61
Transmembrane Helix	132	150	0.52
Cytoplasmic	151	279	0.53