YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	atp4
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKLFCLRS FPSVQRTAWQ RLVLPSTRKF SLTPTTFDKT PSGRIPPDQK AANIISSVPS  60
   61 TSLLTKSGVL TVTAAALATA ISKGIYVVND ESIVVASFLG LVGVFGTLGR KAYNEWSDKT 120
  121 IAKIGGIMQA ARNDHTSAIR ERIDQVASLQ EVESVTQALF HTSKETARME AEIFELEQRV 180
  181 ALAKEAKSVL DSWVHHEANV RAEQQERLVE DVLARVNSKV STQKFQQDAL NESLGEIEKV 240
  241 LASA

Type	Start	End	Confidence
Cytoplasmic	1	62	0.68
Transmembrane Helix	63	82	0.61
Non-Cytoplasmic	83	92	0.74
Transmembrane Helix	93	113	0.62
Cytoplasmic	114	244	0.68