YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cyt1
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQFVKKKNE FLKFARLGSR AFTQNAQKTH SKGSNIALVS SSLLSVGMIA LYYNVYGPSL  60
   61 SAGTPKEEGL HFIQHDWPQS KVLSGFDHAS LRRGFQVYRE VCSACHSLNL IAWRHLVGVT 120
  121 HTADEAKQMA SEVEYEDGPD DEGNMFKRPG KLSDFLPPPY PNVEAARASN NGAAPPDLSC 180
  181 VVRGRHGGQD YIYSLLTGYT EPPAGVEVPD GMNFNPFFPG TQIAMARPLF DDAVEFEDGT 240
  241 PATTAQAAKD VVNFLHWASE PELDIRKKMG FQVITVLTIL TALSMWYKRF KWTPIKNRKI 300
  301 FYQRPIK

Type	Start	End	Confidence
Cytoplasmic	1	35	0.49
Transmembrane Helix	36	53	0.49
Non-Cytoplasmic	54	268	0.95
Transmembrane Helix	269	290	0.75
Cytoplasmic	291	307	0.79