YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYM1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRFATRYN ALFEKAPIMT MCLTAGTLGG ISDAVAQGLT IYQTNKNAMI GLDGVRLNTH  60
   61 PEIPSIKRVL QFVTFGFAIS PFQFRWLRLL SAKFPIEKGA INVVKRVLLD QAVFAPFGTA 120
  121 FFFSWMTLAE GKGFRGAYDK LQAVFWPTLK ANYMVWPFFQ TVNFWLMPLQ YQMPFACTVA 180
  181 IFWNIFLSLK NASSMQESGS QEIELF

Type	Start	End	Confidence
Cytoplasmic	1	17	0.86
Transmembrane Helix	18	41	0.79
Non-Cytoplasmic	42	68	0.93
Transmembrane Helix	69	87	0.94
Cytoplasmic	88	106	0.93
Transmembrane Helix	107	128	0.93
Non-Cytoplasmic	129	165	0.94
Transmembrane Helix	166	187	0.89
Cytoplasmic	188	206	0.94