YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC21B10.07
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIPDSTTDS RHSLSSAALS SASFENIYDP ARKNESTNDV IDNHTDTEID DHDNDHENLD  60
   61 SNNNNENNEA FNEKAAEKKL LPWYRRYFIW ILIFIVALIC SVLIGVLGGV LGHRTAVRDR 120
  121 HPSYKAKTYS LVKEYKGTTF FDGFDFMNIT DPTHGFVQYL DRNSSAKLGL ISANSSNVIM 180
  181 AADSKHNYSS GRPSIRLQST QYFEHGLFIL DLIHLPYGCG TWPAFWTLGD DWPNGGEIDI 240
  241 VEGVNVGTSN QVTLHTGDGC EMEDIKRVMT GTALQTNCWV DAPNSYNAGC GVENPSGPSY 300
  301 GEAFNKNGGG VFVLDWRSEG IRSWFFNRSE IPSDITSGSP QPAKWSEPVA DFPDTKCDID 360
  361 KMFSKQKILF DLTFCGDWAG SSVYSSAGCP GSCNDFVGNN PHNFTEAYWN IKSLAVYQY

Type	Start	End	Confidence
Cytoplasmic	1	87	0.96
Transmembrane Helix	88	111	0.95
Non-Cytoplasmic	112	419	0.96