YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YQO5_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	137	0.99
Transmembrane Helix	138	158	0.92
Non-Cytoplasmic	159	166	0.68
Transmembrane Helix	167	190	0.87
Cytoplasmic	191	200	0.84
Transmembrane Helix	201	220	0.95
Non-Cytoplasmic	221	230	0.70
Transmembrane Helix	231	249	0.95
Cytoplasmic	250	259	0.77
Transmembrane Helix	260	282	0.91
Non-Cytoplasmic	283	290	0.87
Transmembrane Helix	291	311	0.90
Cytoplasmic	312	365	0.94
Transmembrane Helix	366	386	0.90
Non-Cytoplasmic	387	405	0.88
Transmembrane Helix	406	425	0.94
Cytoplasmic	426	445	0.87
Transmembrane Helix	446	465	0.94
Non-Cytoplasmic	466	473	0.73
Transmembrane Helix	474	496	0.88
Cytoplasmic	497	509	0.66
Transmembrane Helix	510	530	0.82
Non-Cytoplasmic	531	539	0.76
Transmembrane Helix	540	563	0.91
Cytoplasmic	564	576	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNPNAGIQ PLTNSISQSA SAHPELYHTT SHESVSTYQL QSQLSHSATS NLSTAANFHT  60
   61 RPPIANDENA QNLSTVNSSH SSELSKANLV DVEKCIQDPL LQIFPTVEDP DRFVFSIDPK 120
  121 SPLIAVNWPF RKKLKITCVY SYVALCSTFA SSVFSVPAEA ITTIFHISLT VSLLTMTVFL 180
  181 CGYIAGPIVW APLSELSGRK LPLLIGMFGF GIFNISVAVA KDIQTIMMCR FFSGFFASAP 240
  241 LTVVAAAFAD MYSNKHRGTA ITIFAALVFD GPLVSPIIGG FLTKSYLGWR WTEYITSFMG 300
  301 FFALVIVYLF CDETYSKAII RNKAKEYRAM SGNYFVHAKS EEEVLTVPDV AKNYLLVPMK 360
  361 LLFTEPIVFL ITLYSSFVYA ILYLLLEAYP IIFSEKRHFS MGVAELPYIG LLVGVFIGSA 420
  421 INISFEPWYY RRCLALGGKP DPEARLPPMM IGCFMFPAGI FWLSWSGYYS YVHWIVPTLS 480
  481 GLATGCGILL IFLQCLNYLI DAYLFRAASA VAANTIMRSA MAAGFPLFAV QMFHNMGVGW 540
  541 AGSLLGFIAV ALIPMPFAFF FFGRKIREKS KMAVVL