YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oac1
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKQTIKAL PAHNPTQVKK LGPVSGFLSG GLAACGAVTL TNPFEVIKTR FQLQGQLTKL  60
   61 DPSKRIYKSV GQAFSLIARH EGIRGLQRGL GTAYVYQICL NGCRLGFYEP IRRTLNTWFL 120
  121 DDPKGNKLAI NVASGAGSGL CGALFGSPFF LVKTRMQSYS PKFPVGQQYG YKHIFNAFSR 180
  181 IIKENGVKGL FVGADAAILR TVSGSSVQLP IYNWAKRMIE HYNLLEEGMI KHLTASAVSG 240
  241 FGVCCTMQIF DTVMTRMYNQ KNKELYKNPI DCILKTIRSE GFFALYKGFG AHLARIAPHT 300
  301 IFCLTFVEQT NKLFLKFQKD

Type	Start	End	Confidence
Cytoplasmic	1	20	0.75
Transmembrane Helix	21	41	0.67
Non-Cytoplasmic	42	320	0.56