YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3417435, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHLPQGSFT QGLIVGQLLT LAIIYVFLRF FLFCSPIPKS VANSPKQTGN ETPDETPSTP  60
   61 LSNNKKRYKK PLTILEPHIL NLLYDVNEHE PESLDWFNVL IAQALIQFRY DACSNDVALR 120
  121 KLETVLNKGA QDKSMVDHIY VRDLSLGDGF PVFSHCRVLP HQHNSSQLRA EMLVSLTDNI 180
  181 NCTVDTKLLL NFPKPAFATL PLSITVRICK FVGKVSLFTT LIIMIYFSPS NGAGQPAYMN 240
  241 LSFDPNFVIS LQVSSLVGAR SKLQDIPKIT QLIESRIRQW FTNRCVSPQF QQIAIPNLWP 300
  301 TSAKEGHARS HAPQEESSNE D

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.58
Transmembrane Helix	13	33	0.89
Cytoplasmic	34	210	0.66
Transmembrane Helix	211	227	0.50
Non-Cytoplasmic	228	321	0.62