YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1198.07c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAVIVAIVR WERAMIGLLR HCAARLVAFV NNTTISKPYF STFFEGGIHS LLFFYPKRNW  60
   61 WFFIKMRYLS FFFEFFFLFS FAFAFDFDVT SDDSINSALT TVTDGMLNYY QSTSHTFTAY 120
  121 WWMTGAGLNS MTDTYAATGN TTHLDMLISA LVANKGDNND YAPNSEKFDL GNDDQGIWGL 180
  181 SAMSAAEVNM TTGDSSASFT ELAQAVFNEI MSRWDTSSCG GGVRWQIYSF NNGYSYKNSI 240
  241 SNGILFQLAA RLARYTNNDT YVDLAQKVWD WSTTVGFVDL DDYTVYDGAS VTSNCSSITN 300
  301 EQWSYNVGVY LAGTAFLYNY TNGSSVWQTH MEGLMNKALD YYFTSDKIIY EPSCEPTESC 360
  361 NSDQTAFKGM LARFLGYTMQ LAPYTVETIL PYIQSSAEAA ALACSGGSDG VTCGYMWYWN 420
  421 NGTWDDHYGL GEQISAVETF QALLAQQSAT ILTLDTGASS ESNPDAGTDD GDTVTITPAT 480
  481 KSDKGWAGFL TFAFSFVFLL FSIWLYF

Type	Start	End	Confidence
Cytoplasmic	1	67	0.66
Transmembrane Helix	68	87	0.90
Non-Cytoplasmic	88	118	0.83
Transmembrane Helix	119	137	0.40
Cytoplasmic	138	484	0.59
Transmembrane Helix	485	506	0.92
Non-Cytoplasmic	507	507	0.63