YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC342.03
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVANIIYAL FLLGPSIFLK ATAQTHPIVI KGNAFFDSKT NERFYIRGVD YQPGGSSSLV  60
   61 DPLASRSCKK DVEIFKKLGI NTVRVYQVDN SADHDKCMNA LSEAGIYVIL DLNTYRHSIS 120
  121 RAHPALSYNK VYLQHLFATI DAFKGYDNVL GFFSGNEVVN DEDTTAITWV KAVTRDVKAY 180
  181 IKKHSDRHIP VGYSAADVAE NRLQLAHYFN CGDESERADF YAFNMYEWCG YSSMTVSGYY 240
  241 DRIKEFSNYS IPLFLSEFGC NTVEINDDTT PNRPFTEIEA IYSHDMTPVF SGGLVYEYSA 300
  301 EPNHYGLVVI DKDDERRVSR NFITLMKQYA KTPNPKGDGG YKKAGSPSKC PANSTQFNAW 360
  361 EKLPEMPEGA KIYMEKGAGE PLGIEGPTNM WSPFHDGDDD ESTSRRPKPK NKPSNVTSTT 420
  421 SYTSGMTSSS ESGSSKIGVA FCQALFITVL IATLSF

Type	Start	End	Confidence
Signal Peptide	1	23	0.91
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	436	0.99
Transmembrane Helix	437	454	0.56
Cytoplasmic	455	456	0.45