YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC7D4.09c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLNNWYSL LLTEVAAYFT STTLFVSILK NAPSLSWLMK YGGHDNFGLK PPLIATKLEV  60
   61 PKRWFWHFYA FISLLNPLFT FFILNTNFPI PIFKNIKEDL MYSKKLQVLL LIYEIHTLRR 120
  121 LYENLRFRKS GSKMLAGHYL LGYLFYTHTF LALLLCGRRS YENTMSSMQF VGLGIYAIGS 180
  181 IWQNASHEHL IAQKNHSQYL VLKKGCFKWI TGPHYLGEII VYTGIALIAQ HWLIWLVLGW 240
  241 VLCNMVAISS SYACTVKNKE QSLDFRWTLI PFLY

Type	Start	End	Confidence
Cytoplasmic	1	6	0.59
Transmembrane Helix	7	29	0.78
Non-Cytoplasmic	30	64	0.49
Transmembrane Helix	65	88	0.83
Cytoplasmic	89	134	0.51
Transmembrane Helix	135	157	0.88
Non-Cytoplasmic	158	164	0.50
Transmembrane Helix	165	186	0.77
Cytoplasmic	187	205	0.56
Transmembrane Helix	206	228	0.58
Non-Cytoplasmic	229	231	0.56
Transmembrane Helix	232	256	0.75
Cytoplasmic	257	274	0.92