YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YEO2_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYDNAFGYI PAHWVTILAV ILFSIAFILH VACLAFTRKW LVIVPIIGTI GELAGWACRL  60
   61 DASYNPDDYN AFLGQIIALI IAPVFYSAQA YVLFHHIVLL YGPRFSVLSP KLYGGIFITF 120
  121 DIIALILQAA GGGVAGGADS GSQLQTQGSQ IMLGGICFQL FTIVVFSILF SIFFIALYTH 180
  181 HPIRPSTGRR EPDVPYTRVR TMSCNCLALA TFAMVVRSVY RVIELAQGWE GAVITHEVWF 240
  241 DIFDFIPMIF TSALLIPSLY PALERSKLPF TEKHVSSMEY APSEYGPSEY GPSINDITNM 300
  301 SAVIYPDSFL APKDPKKSFS SEEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.87
Transmembrane Helix	12	33	0.92
Cytoplasmic	34	39	0.83
Transmembrane Helix	40	60	0.90
Non-Cytoplasmic	61	71	0.90
Transmembrane Helix	72	95	0.86
Cytoplasmic	96	111	0.83
Transmembrane Helix	112	135	0.87
Non-Cytoplasmic	136	155	0.88
Transmembrane Helix	156	178	0.93
Cytoplasmic	179	198	0.89
Transmembrane Helix	199	220	0.87
Non-Cytoplasmic	221	241	0.86
Transmembrane Helix	242	263	0.87
Cytoplasmic	264	324	0.97