YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gpi14
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.83
Transmembrane Helix	8	27	0.92
Cytoplasmic	28	37	0.74
Transmembrane Helix	38	59	0.88
Non-Cytoplasmic	60	77	0.82
Transmembrane Helix	78	95	0.87
Cytoplasmic	96	109	0.74
Transmembrane Helix	110	129	0.90
Non-Cytoplasmic	130	132	0.78
Transmembrane Helix	133	156	0.84
Cytoplasmic	157	161	0.77
Transmembrane Helix	162	181	0.79
Non-Cytoplasmic	182	199	0.75
Transmembrane Helix	200	223	0.88
Cytoplasmic	224	425	0.88
Transmembrane Helix	426	449	0.87
Non-Cytoplasmic	450	510	0.85
Transmembrane Helix	511	531	0.87
Cytoplasmic	532	545	0.83
Transmembrane Helix	546	574	0.72
Non-Cytoplasmic	575	591	0.74
Transmembrane Helix	592	611	0.90
Cytoplasmic	612	631	0.90
Transmembrane Helix	632	653	0.94
Non-Cytoplasmic	654	691	0.92
Transmembrane Helix	692	712	0.85
Cytoplasmic	713	760	0.47
Transmembrane Helix	761	780	0.88
Non-Cytoplasmic	781	787	0.40
Transmembrane Helix	788	808	0.88
Cytoplasmic	809	815	0.45

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITFLEVFVY FYFFPLLVFI TLQYPRWTFN KWKALLPVSA YISFYFIIIS SFSTHLNILY  60
   61 FNLSKSMVSF AQVPLEEYLN LLGHSLLTSI IYVMLKRRFY EQSVYNAKNG MLVYVNAIFA 120
  121 VVGIYCSVVH KSILQIGVTL TFICPMLSFL LCFRIIISQK AALVSIGIST LYYCFVQFME 180
  181 VKSALISYDR SLFKFYPIDL FVLLLSQSFI CIIAFGVSDF INFQKEERNF RGKSNSAFYN 240
  241 DFIQSFKSED LIQEYESSLL LEPSLRLRIS YLALFLKNTL QFGYIRKKEN VNLNLVKTPK 300
  301 YDDLTKMNLS SSTANTLIKG IQSYNFQNYE KAYSLLAAGV TNSLLEWTNT SVSDKEYLRI 360
  361 QCFIQSCLQY RLTQDEKYLI DLDVKVCSLF NTSAREALIH YAKAMKLLSK YNSRENMITK 420
  421 LRESSLYLLY APTDAFLLLL LGLLMRLVLL NYGIWHDRRS ALKFTDIDYF VFSDASKYVS 480
  481 IGMSPYMRDT YRYTPMLAIL LLPTQYGFPS WGKYLFSISD LIAGWLMIKL LSRRISYKRS 540
  541 LIYSSFWILN PFVAIISTRG NCEAILGILS IALLYLIEKK SVWLASLILG FSVHFKIYPF 600
  601 MYGIAFLVYF SKPKKGSTFM EKFLSLLSIN QLKIVVGSLF MFTICNLLMY YLYGSPFLEH 660
  661 TYLYHFGRTD HRHNFSLHHL NLYYESSFGA KASSLFAFLP QLSLCMLIPL VFGKKNLPGT 720
  721 LFAQTFAFVT FNKVCTSQYF MWYLVFLPLV LPNSKLLSKK GLICLSLWII GQLLWLISAY 780
  781 NLEMLGKSVF IPLWLSGLLF FFFNVYELKI ILDSL