YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGDF_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.97
Transmembrane Helix	48	65	0.92
Non-Cytoplasmic	66	90	0.92
Transmembrane Helix	91	111	0.91
Cytoplasmic	112	118	0.85
Transmembrane Helix	119	141	0.88
Non-Cytoplasmic	142	148	0.73
Transmembrane Helix	149	169	0.92
Cytoplasmic	170	177	0.85
Transmembrane Helix	178	199	0.90
Non-Cytoplasmic	200	214	0.86
Transmembrane Helix	215	235	0.95
Cytoplasmic	236	283	0.96
Transmembrane Helix	284	306	0.85
Non-Cytoplasmic	307	317	0.89
Transmembrane Helix	318	339	0.91
Cytoplasmic	340	348	0.82
Transmembrane Helix	349	367	0.97
Non-Cytoplasmic	368	373	0.83
Transmembrane Helix	374	395	0.91
Cytoplasmic	396	404	0.82
Transmembrane Helix	405	426	0.87
Non-Cytoplasmic	427	436	0.88
Transmembrane Helix	437	460	0.89
Cytoplasmic	461	497	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKTEEENYS IKELGEKGSD SQEDVAVIFA EKHPIIDKSL NRKLKLKTDL WVMPLLCLIS  60
   61 AFQYMDKSTS NYSSIMGIRT DLNMVGNQYN WVGTSFYLGF MVFSLPLSTL LQKFPLSKVT 120
  121 SAFIVAWGIL MTLTCLVHSY ASYIATRTLL GILESVITPA FVLFIAQWYR KEEQFFRMAF 180
  181 LVAWNGLGGL IGGSMSYGLY KRELENNLTM SPWRILFIIT GLITIINGVF IFIHIPDEPS 240
  241 KAWFLSEKEK DLVLKRLDTD HAGLGSKKFK KYQILEACRD VRMYLYFFLQ IAVAIPNGGL 300
  301 SNFSSIMLKN LGYVKGKALL MNMPTSSISF AALTLFGLIP EFTNRRMDIA LVGLAINLTS 360
  361 GSLIAFAKPT HAQLAGYWLF GISPIPYICI LSCISSNSAG HTKKVFMSAV SMIGYCVGNM 420
  421 VGPQTFRSTQ APKYQGAKVS FVVCYCVAIF IIIAIYAVNV RENRRRDEKN EYLSNELSEE 480
  481 DKKDLTDFEN PEFRYSI