YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC2A9.05c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTSLDRNLY VDNHITLTKM DYQNTETIAE QERNASRLPQ MFQMSSHPVA LFFFLLFRTG  60
   61 AIVAYILGMF FTSSFMLLFI VIFTLLAVDL WTVKNVSGRL LVGLRWRNET GVDGESIWIF 120
  121 ESADPSRPRN AVDQKTFWYA LYLYPFIWII LGIVAIIRFE FLWLALVAVA IGLTSVNTAA 180
  181 YSRCDKDAKR RWATELADSN SSGFVSRFLS RAFIKRFIG

Type	Start	End	Confidence
Cytoplasmic	1	46	0.95
Transmembrane Helix	47	68	0.88
Non-Cytoplasmic	69	74	0.65
Transmembrane Helix	75	93	0.93
Cytoplasmic	94	135	0.95
Transmembrane Helix	136	157	0.93
Non-Cytoplasmic	158	161	0.85
Transmembrane Helix	162	181	0.95
Cytoplasmic	182	219	0.95