YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC409.18
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVGKHVKL FWNVYSDYAV LIAISLSYFV FDVLMLPFTR QFSLEDITIS HPFALHEQVP  60
   61 TKYLGIICVF FPALVLYGFG KLRNNSLLFW KSLMGLLYST MVCGLCVSLL KNAVGRPRPD 120
  121 FLARCQPFES TPKTGLVDVL SCSVPWSDKV LQDGFRSFPS GHTSFSFAGL GFLAIFLAGQ 180
  181 LKMFRNKTSS WKVVVPLVPL SIASWIGLSR SQDYRHHKED IAVGALFGFA IAYVVYRQLF 240
  241 PPLDHHNADI LYVQAELDEG YTNVHSAGNS SATNAEQMV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.76
Transmembrane Helix	14	36	0.83
Non-Cytoplasmic	37	58	0.83
Transmembrane Helix	59	80	0.90
Cytoplasmic	81	87	0.78
Transmembrane Helix	88	111	0.85
Non-Cytoplasmic	112	160	0.83
Transmembrane Helix	161	181	0.90
Cytoplasmic	182	189	0.72
Transmembrane Helix	190	209	0.80
Non-Cytoplasmic	210	220	0.64
Transmembrane Helix	221	240	0.71
Cytoplasmic	241	279	0.69