YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC6F6.01
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	139	0.53
Transmembrane Helix	140	154	0.27
Non-Cytoplasmic	155	183	0.66
Transmembrane Helix	184	204	0.92
Cytoplasmic	205	215	0.66
Transmembrane Helix	216	238	0.87
Non-Cytoplasmic	239	291	0.56
Transmembrane Helix	292	308	0.54
Cytoplasmic	309	328	0.72
Transmembrane Helix	329	351	0.86
Non-Cytoplasmic	352	459	0.75
Transmembrane Helix	460	486	0.77
Cytoplasmic	487	513	0.88
Transmembrane Helix	514	533	0.88
Non-Cytoplasmic	534	547	0.81
Transmembrane Helix	548	570	0.92
Cytoplasmic	571	580	0.81
Transmembrane Helix	581	601	0.87
Non-Cytoplasmic	602	605	0.91
Transmembrane Helix	606	625	0.92
Cytoplasmic	626	642	0.88
Transmembrane Helix	643	665	0.91
Non-Cytoplasmic	666	722	0.74
Transmembrane Helix	723	745	0.77
Cytoplasmic	746	977	0.62
Transmembrane Helix	978	1001	0.72
Non-Cytoplasmic	1002	1020	0.68
Transmembrane Helix	1021	1042	0.85
Cytoplasmic	1043	1073	0.74
Transmembrane Helix	1074	1095	0.94
Non-Cytoplasmic	1096	1149	0.78
Transmembrane Helix	1150	1168	0.39
Cytoplasmic	1169	1189	0.50
Transmembrane Helix	1190	1214	0.87
Non-Cytoplasmic	1215	1273	0.52
Transmembrane Helix	1274	1296	0.85
Cytoplasmic	1297	1302	0.48
Transmembrane Helix	1303	1322	0.71
Non-Cytoplasmic	1323	1330	0.64
Transmembrane Helix	1331	1351	0.89
Cytoplasmic	1352	1358	0.76
Transmembrane Helix	1359	1376	0.88
Non-Cytoplasmic	1377	1394	0.78
Transmembrane Helix	1395	1417	0.85
Cytoplasmic	1418	1433	0.81
Transmembrane Helix	1434	1451	0.67
Non-Cytoplasmic	1452	1485	0.71
Transmembrane Helix	1486	1509	0.83
Cytoplasmic	1510	1854	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSNSDPS SSPDNTDFIP LKDNPKDTSS YINKKNPFVN DSFDSHDDSY LDNVNPFEYN  60
   61 VADDEDTISM TSDGVEFHNL GITETVDEQD KILSELQLAY PTVSRYSETL DKGLLNGDKT 120
  121 TKGDYTSLRR FRKPFLFDKL SPYFTHFFSE IYAAVLRVVG PPRANETPGR NLPFSPILRQ 180
  181 IYNHPLYNIF IFVVIVLHAV LLMIRSDDPH DKSQTIDYLI IVIGILYTLE MLLKIYLFGF 240
  241 LYDGSSSFYD FINSYTKKTP RTMSYLRHSW NRVDFVAIVA LWISVIGKKQ QGIFRLFSMI 300
  301 ACLRLTRLLN ITRKTETILK SLKESSTPLV QVVSFNAFFG VMIAILGVQF FKASLNRQCV 360
  361 WLGDYGDQYL PTGQFCGGHW ENGIKRAYLD KNGFPSNVNP RGFICAEKSV CRVVENPYSN 420
  421 TVSFDNFFNS LELIFVIMSS NGFTDIMYDI MDAEYFVSCL LFIISAYFLT LWLMSLVIAV 480
  481 VTSSFIDLQH SGKNQKEQKS VDKHLIRNKL CEKYLFYSNF IWISFIVAQF VTLCTQTYDQ 540
  541 TSSTANRYLI FYACVDFLLA AEVILRFFAY LPDYRLFFRR YTNLVDIVLA VLNLVTLLPS 600
  601 IRKNPVAFGW LSIFAIARIY RCILLIPYTR KIAKLLFSNF KQLLNLMLFL VIVLFIASLC 660
  661 AVRLFQDLPN DGDSDDDAIS FATTYESFLY MYQILTSENW TDVMFAIQAR LAHLHLSWIP 720
  721 GAFFTLWFLF SNNVVLSMFI AVIQVNFAPS ESDLKMEQLK MYLARLLRNY NPFQASLTLN 780
  781 ALIKRNGSRK GKTVDESHYE WLYEDNIIKG FLRVTNIPPK EPLKPSLDTS PELSKYSLAK 840
  841 LSNNFKRFVM RDDPFSQAYF KRVIGIRWEK DMNLKTAAKD MQAAKAFVRI KQTEFLKNHP 900
  901 KYNDVFWVIK PSNRIRRFCQ RLVMPGVNER YGGVEPYQWV YRVIQVFIYA CILTAVIIEC 960
  961 IATPIYERDH LLNDKQHAWF VWTEVAFATI FTIEAAIKII ADGFCITPNA YLRSTWNCID1020
 1021 FFVLVTLWIN LYAVLTSHAL LSRAFRAFKA LRVLRLINLT QTSQRMFHDA LISGFFKIFS1080
 1081 AAVVSATLLI PFALWAKNVF GGLLYSCNDD NVLSASQCVL EYASTPNNWE VWAPRVWSNP1140
 1141 PDYDFDRFPH ALLALFEIAS IEGWVDIMRS VMDITGFNNQ PQTNASSGNA MFFVLFNLVS1200
 1201 MIYILTLFIA IIISNYAERT GSAFFTAEQR AWLELRRKIK SMRPSKRPAI RPLGLRGLCY1260
 1261 DFAVQKHGIW RRTFTGLYIV HLLFLLTIFY PCPIAYTYVR NSIFLILSIC YTINICVKVY1320
 1321 GLSFYYFFHS FWNMFDVVVT LGSLTCNIAI LAKFENRSLT LLQTTLLVLV TVHLIPKFDN1380
 1381 FDQLSKTVVA SLPSIFSLIA TWIVLYITFA IAFNQIFGLT KLGLNGGPNK NFRSIRNALV1440
 1441 LLFTMTFGEG WNDVMHDYTI SYPNCVNGDD FYNSDCGNKP WAYGLFIAWN IISMYIFVNM1500
 1501 FITVVFDNFS YIHTKSSSFT NLQRNDFRQF KDSWAPFDPM VTGYIPKRNA VKFVLSLRGV1560
 1561 YDFRIYRDEH TLRSIISKVQ SKTGQQSVPM LENPLMGSEI NLEALDQIID TIDVNVVKER1620
 1621 RNVLNSLCTE IMTLPGNVIS FSNILMLVVL HKIVDHREAF PISDYIRRAY VLSELEKSIR1680
 1681 MEKLLGLVET SIIRKTFLQH MEEKKKALEN PFILLSEVSE ILPETPIQEV LRQHNADPEQ1740
 1741 LLMSTRTPSV SDRSFSIVES TVPTIASGEG DDNHSVEDHL KVPTDNEPRR SPSLKEVLLR1800
 1801 GSHSLHSNND RTSFDIEAGF GTAESDFQFG GATEDINRIA DRIDDYLDRD SFKG