YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YFPC_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	433	0.59
Transmembrane Helix	434	454	0.88
Cytoplasmic	455	459	0.45
Transmembrane Helix	460	481	0.88
Non-Cytoplasmic	482	488	0.48
Transmembrane Helix	489	507	0.77
Cytoplasmic	508	516	0.60
Transmembrane Helix	517	538	0.89
Non-Cytoplasmic	539	556	0.62
Transmembrane Helix	557	578	0.95
Cytoplasmic	579	598	0.66
Transmembrane Helix	599	617	0.84
Non-Cytoplasmic	618	646	0.58
Transmembrane Helix	647	664	0.86
Cytoplasmic	665	670	0.74
Transmembrane Helix	671	694	0.81
Non-Cytoplasmic	695	725	0.93
Transmembrane Helix	726	749	0.90
Cytoplasmic	750	759	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGNRRVRFN TDRRPYLSPL QTSFPSSTSF QTPTFLIEED DEDTEDDDGP QVLPVHRAPS  60
   61 PAAFRKRGSI TSMDQYLVNM PAVPSPTASK VGLLDARNTD VESYAASYKT QSSSNSVNSL 120
  121 PMRRPTLDRS YSAPMIAAKN LQSDPEKMSN VESTNELPST TTEAYKLVAA HTAARLEHMR 180
  181 LNALKAANDE GEDVKDNEQD DNIDESDPFA NPKASYRGGV LSNLLKLYTN SNTVTSSRIS 240
  241 LKHTDPTKWQ KHAKRTASSN SLTDLLHASN QTFMAPASGL QSTEEIPQFS KTGHSRGRKF 300
  301 NFHHHSRKNS GLNEEYKITI HLADILQRQK YILKLCRALM VYGAPSHRLE EHMASAAKVL 360
  361 EIEGQFLYIP GCMIVSFGDV NTHTSDMHIV RVNQTIDLGR LKLVHDIYKA VLHDRMGVEE 420
  421 AIRGLDEIFK SPPYFRTWIL VVFYGFASAT ILPMSFQGGW IDLPIAFILG CLVGILQHYI 480
  481 APRSTMYNSL FEVTGSIITS FLSRAFGSIR YSGGRRFCFS ALAEGAIVLI LPGYIVLCGS 540
  541 LELQSKNIVA GGVRMFYAII YSLFLSFGIS IGAALYGWMD HNATDSTSCP VSTQMDDKWK 600
  601 ILFVPLFTLC LLIVNQARPS QWPVSIFISC AGYVVNYFTA KHFGSNPIAN AIGSFAIGCL 660
  661 GNIYSRLGRG VAFAAVLPAI FVQVPSGLAA QGGISSGIEV ATSLTNNTYN TSSSSTLDVN 720
  721 SLKFGLVMVQ IAIGISVGLF ASALVVYPFG KRRSGLFSF