YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DHSD_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNVDTRSA NTNSPTTTTS FSWFTNNMLQ TRLGLGALRQ GRLLFAVKSF STTSVAKIFP  60
   61 PPPQTIKGTV NDAAVFPHHS KLHGSYHWDF ERIIAIAMVP QVMIPLFTGT SHPLMDAALA 120
  121 CTLITHAHLG FESCVIDYFP ARRFKKLSPL MHWILRGCTV LTLIGVYEFN TNDIGLTEGI 180
  181 KKLWKS

Type	Start	End	Confidence
Cytoplasmic	1	89	0.80
Transmembrane Helix	90	109	0.55
Non-Cytoplasmic	110	116	0.55
Transmembrane Helix	117	136	0.52
Cytoplasmic	137	151	0.64
Transmembrane Helix	152	169	0.69
Non-Cytoplasmic	170	186	0.79