YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PEX13_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNQNEKGP SLPSYPAGGI MSVSNSNADT NQGVTQHPLA NRIVNPNYYN MGFNPYSGFN  60
   61 SFIPSFNPFV PLETNLPGNG PISSLQVIES IVGAVGSIAQ VLESTLMAAH MSYNTFVSVS 120
  121 ENLNKLKSSI GAIFGIVSLL SRLKRLVLKF FKHSKIDEMN SQEYDVFEKE EGNHKNSIYS 180
  181 IVSSLAIILG LVGLPYAIIR LFKNIYEKEK QIQQAKIRKK IDSLEFCKAD YEFMSRDPGV 240
  241 EMSLKKGDII AILSKTDTQG NPCEWWQGRK RSGETGWFPS NYCSIISR

Type	Start	End	Confidence
Cytoplasmic	1	90	0.62
Transmembrane Helix	91	107	0.41
Non-Cytoplasmic	108	127	0.63
Transmembrane Helix	128	143	0.42
Cytoplasmic	144	177	0.53
Transmembrane Helix	178	199	0.82
Non-Cytoplasmic	200	288	0.62