YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC18A7.02c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	175	0.99
Transmembrane Helix	176	194	0.96
Cytoplasmic	195	207	0.72
Transmembrane Helix	208	227	0.89
Non-Cytoplasmic	228	244	0.92
Transmembrane Helix	245	268	0.90
Cytoplasmic	269	284	0.89
Transmembrane Helix	285	304	0.92
Non-Cytoplasmic	305	312	0.66
Transmembrane Helix	313	335	0.92
Cytoplasmic	336	355	0.89
Transmembrane Helix	356	378	0.94
Non-Cytoplasmic	379	457	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLISLLWS IFFSIVYSEK TLLNFKHYEL CNGIYSKSES GGSLNPAIYV NWTEPWGQED  60
   61 EVEVLIFNWK EIRKLGAFRS DDQFTYICDY DAVYTDHLCE ADQLGLYLWN STSAKSIRSY 120
  121 IIPTNADPQN IIYEISQSGY YCIWSHSKKM LPYQALVNWQ NAYGGLPASQ FPRMPISGGI 180
  181 TIAYSVILAL WMFFRFQYKH SIVTVQKAIM FLLIFSCAQQ AVTSIVLDTE NLRNRGNFTW 240
  241 LGETLVSILF ACQLVLDLAL LLILSWGYTR YSTNMRDRLF TEAKIPLIIC FFALFVVRFF 300
  301 AITIQSIHLG LWFCFFFLTA CISALYILFG AFVALPSTLR ALVEQRYYTL HSIYKIFRIM 360
  361 VLCGVVTIFS FSLVALIFCS NTNNNSTNKL WKIRWYFLDG WIDGVHLTYL ITLSSLWRPS 420
  421 QENPDLDPTG LSYPVLDPRL EEELDLLEED IRADKSK