YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC36.02c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	138	0.99
Transmembrane Helix	139	159	0.94
Non-Cytoplasmic	160	167	0.69
Transmembrane Helix	168	191	0.85
Cytoplasmic	192	202	0.83
Transmembrane Helix	203	221	0.94
Non-Cytoplasmic	222	231	0.68
Transmembrane Helix	232	250	0.96
Cytoplasmic	251	260	0.77
Transmembrane Helix	261	283	0.90
Non-Cytoplasmic	284	291	0.85
Transmembrane Helix	292	312	0.90
Cytoplasmic	313	366	0.94
Transmembrane Helix	367	387	0.90
Non-Cytoplasmic	388	406	0.88
Transmembrane Helix	407	426	0.94
Cytoplasmic	427	446	0.86
Transmembrane Helix	447	466	0.94
Non-Cytoplasmic	467	474	0.77
Transmembrane Helix	475	497	0.87
Cytoplasmic	498	510	0.66
Transmembrane Helix	511	531	0.83
Non-Cytoplasmic	532	540	0.74
Transmembrane Helix	541	564	0.91
Cytoplasmic	565	577	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTPTAEEL ALQNTVSQSA SAHPELYHTV SHASNNSYQL PQLSRSATSN FSTSARFAAR  60
   61 YPTTAGESFQ NLTPVNSNPS NQNSKTEPNP DDVEKCIQDP LLQVFPVVEE PERFVFSIDP 120
  121 KSPLIAVNWP FKRKLKTTCI LAYVALCSSF ASSVFAVPAE AITTVFHISL TVSLLTMTVF 180
  181 LLGYCSGPII WAPLSELSGR KPPILIGMLG FGIFNISVAV GKDIQTIMMC RFFAGFFASA 240
  241 PLTVVAAALA DMYSNKYRGT AITLFSAMVF DGPLVSPIVG GFLTKSYLGW RWTEYITSFM 300
  301 GFFALIIVYL FCDETYSKAI IQGKAKEYRA ITGNYFVHAK SEEEVLTLSD IAKNYLLVPM 360
  361 KLLFTEPICF LITLYSSFVY AILYLLLEAY PIIFGEKRHF SMGVAELPYI GLLVGVFIGS 420
  421 GINIAFEPWY YRKCLAQGGK PDPEARLPPM MIGCFMFPAG IFWLSWSGHY SYVNWVVPAL 480
  481 SGLATGCGIL LIFLQCINYL IDAYLFRAAS AIAANTIMRS AMAAGFPLFA VQMFHNMGVG 540
  541 WAGSLLGFIA TALIPMPFVF FFFGRKIRRM SKMAVDF