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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPBC18H10.16
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.30
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLLTKSSQ VFDFLADRLS VRKSRRFWET QENLESSTPL LQEPQQSYRS NSFNELPPLS  60
   61 RSVTFAENEQ PNEAVKLGTF EGCFIPTTLN VLSILLYLRF PWIIGEAGVL KTLLMLFISY 120
  121 AVGIFTSLSI SAICTNGMVR GGGAYYAVSR SIGPELGGSI GLIFYVGQIL NTGMNISGFV 180
  181 EPIISIFGKE SGTISQFLPE GYWWVFLYTT CVLAMCCILC CLGSAIFAKA SNALFVVIIL 240
  241 STISIPISSI FVHPFKDPSL LVHFTGLKWS TLMKNLASAY TENEKGTGYE SFKSTFGVFF 300
  301 PATAGLLAGA SMSGDLKAPS RSIPKGTISS QATTFLLYLL VILCVGASVT RTGLLLDMDV 360
  361 MEHISLHPLF IISGILSSGA FSSFMGIFGA AKLLQAIARD DLIPGMFFFA KGSSYDDIPY 420
  421 VAIGVTYLIT QISLFWDINM LSSMITMTFL LTFGFINLSC FLLRISSTPN FRPTFRYFNR 480
  481 RTTLVGTILS FGVMFYVDRL NAFISFLIAG ILVVVIYFTC PPKNWGDVSQ GIIYHQLRKY 540
  541 LLQTNKAREN IKFWRPQILL LINNPNRSEN VIRFCNSLKK GSLYILGHVI VSDDFQASMD 600
  601 DLRKQQRLWH QFVLDRGIKA FVELTIAPDE VWGIRGLISS AGLGGIRPNI AVLTFINTNY 660
  661 RRHRIYSGSS FSLENTSEES ESDSKKEFVE HDILPVKWVQ ILEDMLVGSV DVMVTNGFDR 720
  721 LNWPKRKGEK QYIDMFPIHR ISGVGSEVNE STPTFATNFE TYTMVFQLSW ILHTASDWKQ 780
  781 GCRLRLITLV EFENEIEAER ESMHQMLETF RIKADVVVLC LAAMNLDAYR YIVKNEHVRP 840
  841 SKSSELENLL KDDSWWQEEK KRRGNTVDSL GPIRFPRRMS GYNFRSASFD KSAPPLSVPL 900
  901 SFRLGPHMHS VKSFETESSF GNRSLSPKQE NRRTYSDSTI ESSLMPNVVR EDSSSDRLAP 960
  961 KKKIGRDYSK EKLTFNDLSS RSQYIIMNEI VLKHTKNTSV LFTVLPAPLA DTHKSFRKSE1020
 1021 EYVDDLLIFM EGLPPCALIH SKSLTITTAL 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle