YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NDH1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSRSILRG MPKAGIPKSP LALSASRNLR LANSVRFASD AASSPKSTTS KWKILKRTTL  60
   61 GLFATAVVLY GANVYRFRHP DPHQPLPDPS KKTLVVLGAG WGATSILRTI DTSLFNVIVV 120
  121 SPRNYFLFTS LLPSTATGSV HTRSIVQPIR YMLRHKSCYV KFYEAECTDV DADKKVIHIK 180
  181 KTTTDGVDLE QEIKYDYLVC SHGAETQTFN IPGIAEYGCF LKEIWDAQKI RARILHCLEQ 240
  241 AQFKDLPAET RRRYVHTVVV GGGPTGMEFA GEMADFIEDD LKSWYPELAD DFAVTLVEAL 300
  301 PSVLPMFSAK LRDYTQSLFD SSHIKIRTNT ALKKVTAENI HVEVKNPDGS KQEEVIPYGL 360
  361 LVWAGGNRAR PLTKKLMEGS EEQNNRRGLV VDEYLKLKGY KDIFALGDCT HTAYAPTAQV 420
  421 ASQQGAYLGQ LFNKLGSLNF EKPSEDRHIA LGDEMDSSTL ISLANEKHAS TKVFLPFKYS 480
  481 HQGSLAYVGH EKAIADIEVP WFGKQLHASG ALAFYFWRSV YLSELYSLRN RTNVTLDWIR 540
  541 VKLFGRDISS L

Type	Start	End	Confidence
Cytoplasmic	1	53	0.52
Transmembrane Helix	54	72	0.45
Non-Cytoplasmic	73	551	0.94