YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC947.06c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.91
Transmembrane Helix	56	74	0.81
Non-Cytoplasmic	75	92	0.81
Transmembrane Helix	93	113	0.93
Cytoplasmic	114	122	0.81
Transmembrane Helix	123	142	0.91
Non-Cytoplasmic	143	152	0.64
Transmembrane Helix	153	175	0.88
Cytoplasmic	176	181	0.90
Transmembrane Helix	182	204	0.90
Non-Cytoplasmic	205	213	0.83
Transmembrane Helix	214	234	0.92
Cytoplasmic	235	284	0.94
Transmembrane Helix	285	308	0.84
Non-Cytoplasmic	309	324	0.90
Transmembrane Helix	325	347	0.93
Cytoplasmic	348	367	0.95
Transmembrane Helix	368	387	0.97
Non-Cytoplasmic	388	394	0.81
Transmembrane Helix	395	417	0.91
Cytoplasmic	418	426	0.75
Transmembrane Helix	427	449	0.81
Non-Cytoplasmic	450	460	0.78
Transmembrane Helix	461	482	0.93
Cytoplasmic	483	498	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKENDHLNSV SSSEIEKCDE DVEEELYSYP DSDFLVTFNG EDDPEKPLNW PVSIKLLNTA  60
   61 LYGLTTFAAQ FNSTTMSPTT SHLVNAYPIG HEVAVLPTCL YILGIAFGPM IFAPFSEVNG 120
  121 RKIGVLVPFF LSILFTIGTA SSDSVAAIMC TRFFAGLFAG APVVSSGGVM ADLWCPAQRG 180
  181 TALIFYAFFV VSGADFGPII SSLVTEHSDT AWRWPLWTIV IIECFILTLD VFLIKETFGP 240
  241 VILATKAKNL RLTTKNWGLH AAHDEYRLDF KEFVTLHLVR PFAMLATPIV FFIAMFASYV 300
  301 YGILYLVLTT IPYTFGMTKN WQGTISTLPM IAMFTGVVIG GSFNIMWNQR YAKLITANGG 360
  361 KPLPEQRLPL MMAVGWLMPA GIFVFAWTNS PNIHWIAPFI GISMMGAGFF VIFQGCLNYL 420
  421 VDTFTKFAAS AIAANTFTRS IFAGTFPLFS EIMFKKLGVH WGGSLVGFIA LGMIPIPFIF 480
  481 YMMGDKLRRK NRFIKLIT