YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBP19A11.02c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFSVLCKFL LLVTAVMAQT EYTPGFTTDV ATTVTPTPLP SANVTTTSFS SASTETSTHS  60
   61 VTSTNITSIV PPPSTSHNST TTTVPPTTSM NTTTTVPPTT SLNTTTTTAP PTTHVNSTTT 120
  121 VVPPTTHVNT TTVVPPTTHV NTTTVVPPTT HANTTSFVPT TTESSIHPIT TGFYNTTFTT 180
  181 GYFNTSVTSV AVHNSTTVFP TSVPIVNTTS FNVTTIPSSA VHYASPSGLL ALVVMLISAF 240
  241 AFLA

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	219	0.99
Transmembrane Helix	220	243	0.86
Cytoplasmic	244	244	0.91