YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC17G6.15c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCPPIGDVF VYVILLFVFM LMRQHAMDIT DPRTLLSTSQ DLNSAVKTLE DYGAGKIAQL  60
   61 DETVWHAKKI VDSTLHPDTK EPVFLPFRMS CFVLTNLVVT AGMLQPNLGT AGTVFWQWMN 120
  121 QSVNVAFNSA NANKSTQLTL PQMTKSYIYA VSASCGVAIG LNKIVPRMNF LSSSSKAVLG 180
  181 RLTPFAAVAS AGVLNVFLMR GEELRQGIDV FDKEGESLGK SKKAAFYAVG ETALSRVINA 240
  241 SPIMVIPPLV LMRLQKQNWL RTRPKLTIPV NLGLITLTSL IALPLAIGVF PAREKISPFK 300
  301 LEPQFHHLKD KSDQPIVEVE FNRGL

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.72
Transmembrane Helix	6	26	0.69
Cytoplasmic	27	91	0.92
Transmembrane Helix	92	109	0.86
Non-Cytoplasmic	110	145	0.86
Transmembrane Helix	146	165	0.91
Cytoplasmic	166	176	0.88
Transmembrane Helix	177	199	0.88
Non-Cytoplasmic	200	232	0.89
Transmembrane Helix	233	252	0.80
Cytoplasmic	253	267	0.79
Transmembrane Helix	268	290	0.89
Non-Cytoplasmic	291	325	0.88