YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1348.01, SPB...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPESLKKQ VEPPGYNELF MVEDVCNVDL EQGLDLCKPE KVNKQSQRSR QSRQSLFTNT  60
   61 IKPQKDKMNI KTNKIKEFLN DLFTEFSKFH NSYYPDGRIS TRSNFRWPLL IIWSIIIVFA 120
  121 VDKKFEVQKF LSIWINENRF YSEIWVPIAI YVCLLVLMLL SLIFFAEFAV LALRVTGVII 180
  181 AVLGMIIAVL GMIIAALGAT ITGLLYFGHW ALYKLVILSL GFKIVTPGDV CVSNTLPTHN 240
  241 GETALHSETT VGSDIEQIEL QNMPTPVKK

Type	Start	End	Confidence
Cytoplasmic	1	104	0.90
Transmembrane Helix	105	123	0.86
Non-Cytoplasmic	124	143	0.80
Transmembrane Helix	144	166	0.90
Cytoplasmic	167	176	0.60
Transmembrane Helix	177	201	0.88
Non-Cytoplasmic	202	205	0.49
Transmembrane Helix	206	226	0.47
Cytoplasmic	227	269	0.61