YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC23G3.05c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAPRVSEV LTKKNLPPLS LYNFYIYIRD EENAIEFLDL FLDIMLHKFL FREHIRGLYK  60
   61 AGVTSTSLNT ESSSTLGPHH FTRFRSASLS LEDLSTVYWP NFGPLLLEEL SNEQTINSSD 120
  121 LLLSKDRAAY LKNLLTSNIQ SLTQESTVIS KEQVKMFTQI IIEKYFNPAS PHEVMLPPQL 180
  181 VQPILDCKEH QRQDELRLFE DVETYLLNFL LKPAYYRFLN HKFKHNLNPL TCTGRFIIGY 240
  241 VSTFAAYWLG FCGIFLDYSR RKRVWTLLPF AFGFYNLICT WSKHDPVLAL LGYSEVKPFH 300
  301 YEKVLQPSIR LSLNRRAIFV LSIIVLIVGA NTAIFSCVPS IRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	235	0.90
Transmembrane Helix	236	256	0.91
Cytoplasmic	257	263	0.77
Transmembrane Helix	264	284	0.53
Non-Cytoplasmic	285	316	0.52
Transmembrane Helix	317	338	0.93
Cytoplasmic	339	343	0.44