YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC19C7.11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.98
Transmembrane Helix	94	115	0.93
Non-Cytoplasmic	116	179	0.97
Transmembrane Helix	180	198	0.94
Cytoplasmic	199	229	0.80
Transmembrane Helix	230	248	0.84
Non-Cytoplasmic	249	286	0.85
Transmembrane Helix	287	309	0.83
Cytoplasmic	310	329	0.82
Transmembrane Helix	330	349	0.94
Non-Cytoplasmic	350	368	0.85
Transmembrane Helix	369	389	0.90
Cytoplasmic	390	406	0.76
Transmembrane Helix	407	429	0.88
Non-Cytoplasmic	430	464	0.90
Transmembrane Helix	465	484	0.54
Cytoplasmic	485	489	0.44
Transmembrane Helix	490	514	0.83
Non-Cytoplasmic	515	535	0.46
Transmembrane Helix	536	562	0.73
Cytoplasmic	563	563	0.36
Transmembrane Helix	564	589	0.71
Non-Cytoplasmic	590	621	0.49
Transmembrane Helix	622	638	0.30
Cytoplasmic	639	812	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQKRADSS SSFDQAERRS LDENERKKKY FFNREGSGID NFETDGMVFQ ASKAFDYYLL  60
   61 TTFKDRVNEI INEQNEENVI DQSRWSKLWR IWNVGYSWFI LSIIGTTVGF AAYMLDIVTS 120
  121 WLSDIRRGYC TSHWYYNEKF CCWYSETMGM FKHDLYNDLT FQGSSCTAWK PWTYKFSLNY 180
  181 LIYTAFALLF VLCAAIMVRD VAPLAAGSGI SEIKCIISGF LRDSFLSFRV MLVKCVGLPL 240
  241 AIASGLSVGK EGPSVHLATT IGHNISKIFK YAREGSIRYR DICVASAASG VAVAFGSPIG 300
  301 GVLFGIEVGK FIEILTNSFK EMSGGYDPKM IVYSFFCCLS AVGVLHMLNP FRTGQVVLFE 360
  361 VRYSGSWHFF ELLFFCFLGI FGGLYGEFVM RLFFLIQKLR KKYLSRWGVL DAAFVTVITS 420
  421 LVSFLNPWLR LDMTLGMELL FQECKSSSSP ELINLCDPSL RTKNTILLLI ATFARTIFVT 480
  481 FSYGAKVPAG IFVPSMAVGA SFGYMIGLIA EMIYQRFPNS VLFLACHGSE SCITPGTYAL 540
  541 LGAAASLSGI MHLTVTIVVI MFELTGALNF ILPTVLVVAL ANSIGNMLGK TGIADRSIEI 600
  601 NGLPLLEPEK SINSSNTINI PITEVMASNL ITIPSIGFTW RKLLGMMEGY DFSGYPVVLD 660
  661 SRSNYLIGYL KKSSLKSSFE AAKLEPSFTF DQQLCFGKVD SVGDSKSSKF GESDRIDLSA 720
  721 YMDVNPISVL HTQSIANVAV LFEVLSPSVI FIEKDGNLVG LISKKDLLLA SKYYQEDNDL 780
  781 VNPANRHRAV STERINDSYE NIELKPLKLN IE