YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1442.12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRSRVSPGL KLQSDASNQS NDKENKLLAY VNDNRHFSLI RALHLADLIT LMNGFCGVMS  60
   61 IFSSLRYCLS GQQSAFHLWN AMYFMPFALF FDFLDGKVAR WRGKSSLMGQ ELDSLADLIS 120
  121 FGVSPAVFAF CCGFQTFLDT VILSLFVLCG LTRLARFNVS VNSIPKDGSG KSQFFEGTPI 180
  181 PTTLSLVTVC GVCILKGKTH ENLPWGEWCG NTPFAFHPLV VLFVLSGIAM TSKKLKVPKS 240
  241 TFLLHSLKYV

Type	Start	End	Confidence
Cytoplasmic	1	44	0.96
Transmembrane Helix	45	65	0.91
Non-Cytoplasmic	66	74	0.77
Transmembrane Helix	75	94	0.92
Cytoplasmic	95	114	0.86
Transmembrane Helix	115	138	0.84
Non-Cytoplasmic	139	213	0.57
Transmembrane Helix	214	232	0.93
Cytoplasmic	233	250	0.88