YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LCL3_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQESQYKEKA IIGTGLITTS IGGFFFLRRF RRISNASTIP KNYLNNSTVE NRKYKTMFGY  60
   61 VTRVGDGDNF RFYHTPGGRL LGWHWLRKVP CSRSDLSNET ISVRLAGIDA PESAHFGKQE 120
  121 QPYALEAKEF LHNKLYHKSV RIIPLKIDRY ARLVAGVQYY PIPHFFWKKD IGPQMIRKGL 180
  181 AVVYEGSDGV FCPTKKECLL ALEIVAKKKK LSLWSQGKKL ILPSVYKRGV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.68
Transmembrane Helix	10	27	0.89
Non-Cytoplasmic	28	230	0.81