YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC19A8.06
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVCSCLLP TPSTDFVNQR NMPIPIIAHI AQFKYEHLIT HWAQYTKAAI AVSTIAAFKF  60
   61 WTSGRTTTWE RKMNGMVVMV TGGSSGIGQV VVEKLASLGA QVVILLRTEP DQFTVDYIMD 120
  121 LRKRTKNQLI YTEVCDLSSM LSVRKFATKW IDCTPIRRLD MIVLCSGVLL PPFMDRQTTE 180
  181 EGVELQWATN FLGPYQLLRI LRPVIYGQPG HREVRIVAAT CSSYILGNID FNDLDLSNHP 240
  241 YPRKSPWKVV GNAKLALMTY LYDFQKKAEA HERPDKMPCN LHTIMANPGV VRTPGFRRVV 300
  301 SFGKVWGLFL YLLLWPFWWL LLKGTIHGAQ SFFHAICSPE FASITQPVLV NECSIVEYSR 360
  361 KEITDPEFAE KLIKAADAQI DEVEKQYKKK KIKKSKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.55
Transmembrane Helix	45	62	0.32
Cytoplasmic	63	301	0.57
Transmembrane Helix	302	322	0.85
Non-Cytoplasmic	323	397	0.56