YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1259.02c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.87
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	365	0.98
Transmembrane Helix	366	384	0.86
Cytoplasmic	385	392	0.75
Transmembrane Helix	393	415	0.91
Non-Cytoplasmic	416	430	0.91
Transmembrane Helix	431	452	0.87
Cytoplasmic	453	461	0.73
Transmembrane Helix	462	484	0.85
Non-Cytoplasmic	485	507	0.55
Transmembrane Helix	508	529	0.80
Cytoplasmic	530	574	0.52
Transmembrane Helix	575	596	0.90
Non-Cytoplasmic	597	822	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLVCASSSK CKRNTFLQLA MVLFAVVMAR IALYFHNHLD EPLVDPYDAN GNPQFSEANA  60
   61 LKHVIHLSDD IGYRILGTIE QERAREYIMN EVLALQKQLQ DGPNADIHQM EVSLESGDGA 120
  121 HRFDFMNKYV IKKYQNLKNI VVRLSNGTEA CKEEAVLINA HVDSTLPSPG ATDDALAVAI 180
  181 LLEAIRIFIS RPVPLTHSIV FLFNDAEESL QDASHMFITQ SPLRDTIKCV VNLEACGTTG 240
  241 SEILFQATSN EMIKAYSHVP HPFGTVLADD VFRTGLILSD TDFRQFVQYG NLTGLDMAVV 300
  301 KNSYLYHTKK DLAPYISPGT PQNFGENILA ILTYLVSPEA DLNNMKSSGT VYFSVFNSLF 360
  361 FMYSKLTSKI LNTLVGGLGI LLTLRGSEGS FTVALIAQVI SIAGIFVIPN IWAYILGNVL 420
  421 DCGMSWFRNE YWPLFIYLPA IFASLFFTES LFKRSEHLAL RATIFIFSLL TFIPLPSAYL 480
  481 FTIIDFFMVF ALFLNDKILA KPGTVHPLTY FIGSIGAMTV GFESAINLLE IFVPLTGRIG 540
  541 TDKVADNVVA TVCVCGFNIY FPLMSPWIQR FRSRCCFRLG LLFSIFVVGF SSFILAKQDT 600
  601 YYDSLHPRRI FVQRMENITS NEVSLHIASA DSAPGFDKLS SDLSSLLTDE PVVKTEMDDW 660
  661 NSDWDTVYPF SQFLGSYRIP LNDTVDVTTL PSIKFSNKVV KDNVVNVTVT VEHPGLIWTV 720
  721 VSFDADVLSW SLPEVPSTVR RHHVREVSAY GLDSYSFNMS YLEAPIYFDF VGVDGVGHYP 780
  781 SKASEGRDRA SIQLCEKLTN DYLPDWTDTL CIGVVSGNFK LE