YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1393.02c
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGTPSFQKL MALADSQSAQ AAVQIEQLRK AQIREKAREI TEERNRQRKL QRERELRQKY  60
   61 EEEQRRQQAM EAKRIAASTR QTSERPPLSA EEAKRIREVK EKDRLESKKN ERQGKPRSYN 120
  121 ELLRQASSAP AVNETSSSGL LQSKDKRSQS PHSPKKPVKN SSSRDQPVRN SGATSTASLP 180
  181 PAGLRAGRGS QISASLAWLK TGGASAAPSN PRQPPPTSNF SNRKARYASN GLVQLQTGPK 240
  241 RDKRSAGEVQ DEIMKRRQNS SISQAATPRT VSNSETSYVG SPALKQSKPN SLKSNNTSRK 300
  301 TSASSAITKP KARPHTSRHD EFVVSDDDEL NDRVPDVSSE IWKIFGKRKQ DYVSRDVFSD 360
  361 EDDMEATGHD VWREEQAAAR AARLEDELEE QRERERELAK KRRKNK

Type	Start	End	Confidence
Signal Peptide	1	21	0.83
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	406	0.99