YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC16E9.09c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.65
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLGIFGLLL FTFFFQSQAV HFYFDGSKPK CFLKDMPKGM MVTGIVKAEQ WNNEANKWVT  60
   61 SNNIKIRVQV DETFANNHLI YKNDLRSNEA VRFTTTNEGT HRICYLSTSD GAWFSSTKTR 120
  121 LHVDLASDDK YNLIASSEDE AKDLTDRVAA LNTRLESILG EQMLQRSREM TFRDTSESAN 180
  181 SRVVRWTIVQ IVVLLVTCIW QLSHLQRFFV KEKLV

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	185	0.99
Transmembrane Helix	186	204	0.63
Cytoplasmic	205	215	0.60