YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pvg2
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKLWVNFFS QKLLRLLIPS IIVVFAFAAL FAIYSPIQLG GINFYKRTNL FTVEELGEKE  60
   61 LELSKTVTID IYRKAMCMDD LEQSRKCTTF GLDPPISAHL FYTYNRDTGM NRVARQWNRR 120
  121 IPRVFHTIKG SNFIELSQFT AFEVELRVSH PNWAFVSWSH DDLNELVDKS YHNLHNAWSQ 180
  181 LSREAKDQWG FLLGLYEYGG VWMSRSLQLK KNIDKFVYAA ELSVKQFTEN ITSSTVEEFQ 240
  241 PIFMAPKSLQ YDFMIATPKH PFVLSLINEL CKSEVLLKIL SKRPYHGLDA AEALFAENRE 300
  301 SITIREQEFF VNTYIDDGKV FVKNNPHIIF IPTEAFASTW DFLPSEESSE MCFADSPLFD 360
  361 PDYCISHSSK PDGNELAIYW SNSFDLITA

Type	Start	End	Confidence
Cytoplasmic	1	12	0.79
Transmembrane Helix	13	34	0.74
Non-Cytoplasmic	35	389	0.98