YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	alg2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQENSVHRS STKKTPIKIA FIHPDLGIGG AERLVVDAAV GLQSLGKEVV VFTSHCDKKH  60
   61 CFEEIRDGTI KVKVYGDWLP SSIFGRLSIF CSSLRQVYLT MILLTNYMHF DAIIVDQLST 120
  121 CVPFLLLASQ MILFYCHFPD KYLAKRGGIL KKLYRIPFDT VEAESVRLAD RIVVNSKFTA 180
  181 SVFKKAFPKI RKPLRIVHPC VDIEAASKPL EFQLPEKILY LRYSQRKLLI SVNRFERKKD 240
  241 IRLAIDAFSA LRDLSANRFP EYLLLVAGGY DIRVSENRRY LKELQEFCEQ KDLSYTTVKD 300
  301 NWDNITVAPS TNVLFLLSVP SKVRDALISS SRILLYTPEN EHFGIVPLEA MLRKVPVLAQ 360
  361 TNGGPLETVI DGKNGWLRPR DAKIWGNVIY EATTSTTYDT AAMGEAGSEW VKNEFSTDAM 420
  421 ARKFESEIMS GIRSITPEKR LMRRVNGLLA VFVLFMLFWG TCIIAATVPF AIIKLYFAQT 480
  481 YSSVKLGFML GTCIVSVSFL TFTVYAKLTN L

Type	Start	End	Confidence
Cytoplasmic	1	82	0.91
Transmembrane Helix	83	105	0.61
Non-Cytoplasmic	106	117	0.56
Transmembrane Helix	118	138	0.76
Cytoplasmic	139	447	0.95
Transmembrane Helix	448	473	0.88
Non-Cytoplasmic	474	485	0.81
Transmembrane Helix	486	506	0.94
Cytoplasmic	507	511	0.81