YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAPB17E12.11
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFFKILSFF SLFVITCFAK LDLNSKTDAD GVIQITGRLF HRIVNGKQDF TTVALFSADS  60
   61 STMNCDVCRL IEPEFKALAN SYKLKYGLDS GIRFTYADFG KNKNLFQDFS IESVPNFWIF 120
  121 KPKSIQAIHV DLSHGVTASH LAAIVEKHTG KIADIVYKQD QAKRVGAFLS YIIVGAALFF 180
  181 TRKIIVKIFT SRKVWAALTI ITVITLSSGY MFTRIRFSPY SQRGEHGENL WLAGSQQFQF 240
  241 GAEVQVVSLL YTALTMSSIF LAIVAPKVEG AKRQTLFVII WLAFLWIGYS FLVDIFKRKV 300
  301 SMYPFKLLI

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	164	0.99
Transmembrane Helix	165	186	0.88
Cytoplasmic	187	193	0.92
Transmembrane Helix	194	213	0.95
Non-Cytoplasmic	214	243	0.89
Transmembrane Helix	244	265	0.89
Cytoplasmic	266	274	0.85
Transmembrane Helix	275	296	0.89
Non-Cytoplasmic	297	309	0.94