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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPBC27B12.12c
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQQPSNGA QGGNNNALEK TSSNEATSSS STQVSSLSAS GISVSTPRVS PFEPERNMQV  60
   61 QSSQHLEANV QSPVSSQTTY ATPSAYAVPQ ESEIELHESE MVPQKPKKKK RSRRNRKASR 120
  121 KKIPATQSSS ADMDTLHVCP TCGSCSDSKK PQSNKKHRGR RVKHSPKSTL EVPDGIPDIK 180
  181 ALSASMGSSS QHASRYNEGR GSFDTLGTHY HLSKSRKSSS SDSLYSVSSM SIKNDSNSDS 240
  241 LSSSSSSDVS GSDENLPIDK TLYLSVEDPS FMVHPRRPSA TKSCSAAVDC PHTTIPKPPY 300
  301 QSDTDLTELP TKSTAQFSDE TFTVQPRLKS THSSIADNED REVDSQVDEN TRVVEEDVCF 360
  361 PMQEESHVNK GIDFDELDNF AEEELQKQRQ NTDHFRSRQY STCKPFEPHW NDLSPHDPND 420
  421 PSSSLHSNNA EKAAEVPLRS SYYSGGRRSV TSMSDSPYRF SFFSSNQNET IHASVLSDLL 480
  481 DDGATSFRSL FCPEKGVWWL DCLDPTDIEM RVLSKAFSIH PLTTEDIRVQ EAREKVELFG 540
  541 SYYFVCFRSF EQDPELANYL EPLNMYIVVF REGLLTFHFS SATHPASVRR RARQLRDYVH 600
  601 VSSDWLCYAL IDDITDAFVP LIRGIETETE AIEDSVLVGR SEDSSDMLRR IGECRKKTMG 660
  661 MFRLLYGKAD VIKMLAKRCN EKWTIAPTGE IGLYLGDIQD HLVTMTSNLS QFEKILSRTH 720
  721 SNYLAQLTSN SIEENSRTNG ALGKITLIGT LLVPMNLVTG LFGMNVPVPG RDTNNLAWFF 780
  781 GILGVLLGSI AIGWIITMRY NAF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle