YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBPB2B2.01
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	86	0.96
Transmembrane Helix	87	106	0.90
Non-Cytoplasmic	107	116	0.74
Transmembrane Helix	117	142	0.81
Cytoplasmic	143	161	0.80
Transmembrane Helix	162	181	0.86
Non-Cytoplasmic	182	194	0.70
Transmembrane Helix	195	214	0.94
Cytoplasmic	215	225	0.71
Transmembrane Helix	226	247	0.89
Non-Cytoplasmic	248	271	0.79
Transmembrane Helix	272	291	0.82
Cytoplasmic	292	310	0.79
Transmembrane Helix	311	332	0.92
Non-Cytoplasmic	333	357	0.81
Transmembrane Helix	358	380	0.75
Cytoplasmic	381	408	0.84
Transmembrane Helix	409	427	0.93
Non-Cytoplasmic	428	435	0.83
Transmembrane Helix	436	459	0.88
Cytoplasmic	460	478	0.90
Transmembrane Helix	479	501	0.88
Non-Cytoplasmic	502	514	0.86
Transmembrane Helix	515	536	0.88
Cytoplasmic	537	585	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAYVRDSES VYSESYPPEN FISNEPEKSK DKDNFNGEEV ISYVGEVETV PAKEENVFRR  60
   61 FINGFKIEKN QQDSAGQGLK RRLKSRHIQM IGIGGAIGTG VWVGSSKSLY RGGAASVLID 120
  121 YCIVGTMVFC TVYALGELAV AFPTRGSFVT HATRFIDESW GFALSWNYVF SFIVTIPLEL 180
  181 TTGTMMIKYW TNLNSGIWVT VFIVFLFFIN IFGVKGYGEM EFIMSTIKVV AMCGFIILGI 240
  241 IIDCGGVPTD HRGYMGTHIF RENAFRHKFK GFCAVFTSAA FSFSGTEYVG VAAAETENPA 300
  301 KAFPVAVRQT LFRIAIFYIL SLFIVSLLIS GADPRLTSYH GVDASPFVLA IKDANIKALP 360
  361 SILNAIILIS VISSANAQLY AGSRAIHSLG CNGFAPKCFT LVDREGRPLV ALLILFLFMF 420
  421 LGYLVETGQY DTVFDWMLSI SGLGTLFCWG SICLAHIRYR AAMKHQNRSL KEVGFVSPFN 480
  481 VYASYYAFIL VCLVLAAEFY VSIFPVGGKP DASAFFENYL SAPVILVFFI CHKLYYKTKR 540
  541 ITLSNMDLET DFAYKTPVEE EEEEEKSAGS LSIKQRMKKL SDMMC