YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC29B12.14c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.89
Transmembrane Helix	59	80	0.72
Non-Cytoplasmic	81	89	0.63
Transmembrane Helix	90	113	0.81
Cytoplasmic	114	126	0.47
Transmembrane Helix	127	161	0.66
Non-Cytoplasmic	162	181	0.60
Transmembrane Helix	182	204	0.88
Cytoplasmic	205	210	0.57
Transmembrane Helix	211	235	0.79
Non-Cytoplasmic	236	249	0.61
Transmembrane Helix	250	270	0.88
Cytoplasmic	271	289	0.55
Transmembrane Helix	290	310	0.91
Non-Cytoplasmic	311	339	0.59
Transmembrane Helix	340	361	0.81
Cytoplasmic	362	380	0.64
Transmembrane Helix	381	400	0.91
Non-Cytoplasmic	401	408	0.64
Transmembrane Helix	409	430	0.92
Cytoplasmic	431	458	0.66
Transmembrane Helix	459	479	0.89
Non-Cytoplasmic	480	491	0.59
Transmembrane Helix	492	512	0.85
Cytoplasmic	513	581	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKWRLTKED FTPKGMWRNF KNFIVIEAKP GTTLAERFLT NEDLYPVPKS QRVWGPWNYV  60
   61 AFWLADSVNV NTWMIAGTAV ESGLSWWEAW ITVWVGYTIA AFILTIAGRA GAVYHISFPV 120
  121 LSRSSFGIWG SLWPILNRAV MACVWYGVQA WIGGECVTLM IRSIWPSFSH IPNTMAKSGT 180
  181 ETYQWVGFFI FWLISNVAIW FPVYQIRHLF TAKSFLAPPA AIAFLIWALV KAHGAGDAIH 240
  241 AKTQLSTWNH GWAVTAGIIS CLDNFATLIV NNPDFTRFAT TPNAPIFPQL ITIPMGFGIT 300
  301 TLIGVLVGSA SKSIYGENIW NPLDLLKSFL DHSNHHGVRA GVFFISTGLC LAQLGVNIAA 360
  361 NTVSAGNDTS ALCPMFINIR RGGYIASIIG ICMCPWNLLS SSNSFANSLS AYAVFLSSFA 420
  421 GILIADYFVI RKGYLKVDAL YTINPNEPYW FTYGINLRAF ASYICGLLIN VVGLAGAVGD 480
  481 KVPKAALTMN NIAYLLGIVT SFLSHLIICK IFPVTACGEK FLDERPEETD NYLLTLESTE 540
  541 DTISSYEETE GIPVKKVSYD SKEKSDDGKS GGIDIKESSV F