YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMT1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.99
Transmembrane Helix	33	55	0.93
Cytoplasmic	56	63	0.82
Transmembrane Helix	64	84	0.93
Non-Cytoplasmic	85	122	0.92
Transmembrane Helix	123	143	0.92
Cytoplasmic	144	150	0.82
Transmembrane Helix	151	171	0.91
Non-Cytoplasmic	172	189	0.86
Transmembrane Helix	190	208	0.94
Cytoplasmic	209	221	0.87
Transmembrane Helix	222	241	0.89
Non-Cytoplasmic	242	252	0.73
Transmembrane Helix	253	274	0.92
Cytoplasmic	275	281	0.85
Transmembrane Helix	282	301	0.93
Non-Cytoplasmic	302	307	0.72
Transmembrane Helix	308	327	0.94
Cytoplasmic	328	338	0.89
Transmembrane Helix	339	359	0.88
Non-Cytoplasmic	360	390	0.83
Transmembrane Helix	391	412	0.88
Cytoplasmic	413	497	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTTDATPT PSGVNGGDSM TVNLNQFYNN GDVAWILTST ALVFIMIPGV GFFYSGLARR  60
   61 RSAISMLFLS MMSVAIVAFQ WFFWGYSLTF SHEGGPYIGS LANFGLRQTL GRPSSGASSV 120
  121 PDILFCVFQG MFAAITPALA IGAAADRGRM FPCMVFMFLW TSIVYDPIAF WTWNPNGWLN 180
  181 KLGSYDFAGG SPVHISSGMA ALAYSIVIGK RCDHGTTKYR PHNVPHVVLG TVFLWFGWFG 240
  241 FNGGSSAAAN MRGVMAVVVT HLAASVGGIV WCVIDFAKNR HWSVVGFCEG AVAGLVAITP 300
  301 GSGFVPPWAA VVIGALGAVF CYAATYLKKI IRVDDALDIF AEHGVGGMVG NILTALFAAD 360
  361 YIEALDGSGT AYTGGWITHH YIQLGYQLAD TVSCAAYSFA VSCALLFVMN YIPGLSLRVS 420
  421 REDEVLGLDK IELGESAYYY KDSTDEPPPI TTSGVQYTSP TVSDSASNEK EQEHRAQNEA 480
  481 QKEEEYRAES EAQAPAI