YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC887.17
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	101	0.73
Transmembrane Helix	102	128	0.72
Non-Cytoplasmic	129	154	0.66
Transmembrane Helix	155	178	0.85
Cytoplasmic	179	187	0.79
Transmembrane Helix	188	212	0.81
Non-Cytoplasmic	213	245	0.85
Transmembrane Helix	246	265	0.83
Cytoplasmic	266	319	0.76
Transmembrane Helix	320	341	0.81
Non-Cytoplasmic	342	369	0.77
Transmembrane Helix	370	393	0.81
Cytoplasmic	394	404	0.59
Transmembrane Helix	405	426	0.87
Non-Cytoplasmic	427	428	0.41
Transmembrane Helix	429	446	0.56
Cytoplasmic	447	449	0.33
Transmembrane Helix	450	470	0.47
Non-Cytoplasmic	471	473	0.53
Transmembrane Helix	474	495	0.88
Cytoplasmic	496	625	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITQKVRNW VEEFDVIVAR SAFGRWFRLE GCGHPRERKG SRFSLEISAG LTTFFAMAYI  60
   61 LAVNATILVD TGGTCECTEA NRDDCDKLDD YVLCKEDFHR DLVTATAAIS ALASFCMGLF 120
  121 ANMPVGMAPG MGLNAYFAYQ VVGYNGTGRV SYREALLAVF VEGFIFTGLT VIGLRQWLAR 180
  181 VIPASLKFAT GAGIGLYLTI IGLSPSAGLG VIGHSSSDIV ALGGCPPEYL NADYSCNGHQ 240
  241 LQSGRMWVGI FCGGVLTAIL MMYKFKGAVL AGIALVTITS WPRRSLVTMF PHTLTGDYNF 300
  301 DFFKKVVSFR KINRILVAQQ WNVTGGQFAI ALITFLYVDI MDMTGTLYSM ANYAGLVDPR 360
  361 TQDFEGSAVA YIVDALSISI GSLFGCSPVT AFIESGSGIS AGGRTGILGM VVGICFFISL 420
  421 FFAPIFSSIP VWATGSTLVL VGSMMMKSTT LINWSYLGDS IPAFITIALM PFTYSIAYGL 480
  481 IAGIICYALL NSIIYAIDKM SRGRLVPADY NQKEAWTWRV EGGLLPQWVR RLFKGNRRFW 540
  541 EDPDDRKAMD NATLEMATSR SYSEDGKNEK TTHEDVTMKE TSLKKMDDER ISVDEAVGES 600
  601 ESFSNRQQDF RTPYAGIDMD TDDRI